| 1+25 | 3 | Dani Pedrosa | Honda · Repsol Honda Team | 44:01.580 | 1'21.928 | |
| 2+20 | 46 | Valentino Rossi | Yamaha · Fiat Yamaha Team | +0.344 | 1'21.944 | 263.8 |
| 3+16 | 99 | Jorge Lorenzo | Yamaha · Fiat Yamaha Team | +1.926 | 1'21.951 | 261.2 |
| 4+13 | 27 | Casey Stoner | Ducati · Ducati Marlboro Team | +12.432 | 1'22.083 | 263.0 |
| 5+11 | 69 | Nicky Hayden | Ducati · Ducati Marlboro Team | +21.663 | 1'22.703 | 258.6 |
| 6+10 | 24 | Toni Elias | Honda · San Carlo Honda Gresini | +22.041 | 1'22.665 | 260.7 |
| 7+9 | 5 | Colin Edwards | Yamaha · Monster Yamaha Tech 3 | +30.201 | 1'22.878 | 261.1 |
| 8+8 | 7 | Chris Vermeulen | Suzuki · Rizla Suzuki MotoGP | +32.857 | 1'22.796 | 257.8 |
| 9+7 | 14 | Randy De Puniet | Honda · LCR Honda MotoGP | +40.325 | 1'22.981 | 258.4 |
| 10+6 | 33 | Marco Melandri | Kawasaki · Hayate Racing Team | +48.028 | 1'23.242 | 258.6 |
| 11+5 | 15 | Alex De Angelis | Honda · San Carlo Honda Gresini | +48.810 | 1'23.024 | 258.5 |
| 12+4 | 88 | Niccolo Canepa | Ducati · Pramac Racing | +1:18.531 | 1'24.192 | 252.2 |
| — | 52 | James Toseland | Yamaha · Monster Yamaha Tech 3 | Excluded | 1'23.530 | 255.8 |
| — | 4 | Andrea Dovizioso | Honda · Repsol Honda Team | DNF | 1'22.179 | 260.9 |
| — | 59 | Sete Gibernau | Ducati · Grupo Francisco Hernando | DNF | 1'23.342 | 260.7 |
| — | 41 | Gabor Talmacsi | Honda · Scot Racing Team MotoGP | DNF | 1'24.301 | 253.3 |
| — | 65 | Loris Capirossi | Suzuki · Rizla Suzuki MotoGP | DNF | 1'23.756 | 260.6 |