| 1+25 | 1 | Gabor Talmacsi | Aprilia · Bancaja Aspar Team | 9:04.520 | 1'47.036 | |
| 2+20 | 6 | Joan Olive | Derbi · Belson Derbi | +0.128 | 1'47.190 | |
| 3+16 | 24 | Simone Corsi | Aprilia · Jack & Jones WRB | +0.255 | 1'47.142 | |
| 4+13 | 11 | Sandro Cortese | Aprilia · Emmi - Caffe Latte | +0.340 | 1'47.108 | |
| 5+11 | 38 | Bradley Smith | Aprilia · Polaris World | +0.425 | 1'46.991 | |
| 6+10 | 12 | Tito Rabat | KTM · Repsol KTM 125cc | +0.568 | 1'47.032 | |
| 7+9 | 63 | Mike Di Meglio | Derbi · Ajo Motorsport | +0.846 | 1'46.661 | 208.1 |
| 8+8 | 29 | Andrea Iannone | Aprilia · I.C. Team | +0.928 | 1'47.124 | 206.7 |
| 9+7 | 18 | Nicolas Terol | Aprilia · Jack & Jones WRB | +1.438 | 1'47.347 | 210.2 |
| 10+6 | 35 | Raffaele De Rosa | KTM · Onde 2000 KTM | +2.554 | 1'46.878 | 211.1 |
| 11+5 | 27 | Stefano Bianco | Aprilia · S3+ WTR San Marino Team | +2.829 | 1'47.454 | 209.9 |
| 12+4 | 17 | Stefan Bradl | Aprilia · Grizzly Gas Kiefer Racing | +3.021 | 1'47.590 | 216.2 |
| 13+3 | 71 | Tomoyoshi Koyama | KTM · ISPA KTM Aran | +3.201 | 1'47.526 | 209.3 |
| 14+2 | 60 | Michael Ranseder | Aprilia · I.C. Team | +3.600 | 1'47.309 | 208.2 |
| 15+1 | 56 | Hugo Van Den Berg | Aprilia · Degraaf Grand Prix | +4.547 | 1'47.711 | 207.5 |
| 16 | 77 | Dominique Aegerter | Derbi · Ajo Motorsport | +4.592 | 1'47.909 | 209.7 |
| 17 | 51 | Stevie Bonsey | Aprilia · Degraaf Grand Prix | +4.819 | 1'47.051 | 208.7 |
| 18 | 16 | Jules Cluzel | Loncin · Loncin Racing | +10.548 | 1'48.733 | 208.6 |
| 19 | 34 | Randy Krummenacher | KTM · Red Bull KTM 125 | +10.643 | 1'48.221 | 208.7 |
| 20 | 22 | Pablo Nieto | KTM · Onde 2000 KTM | +10.849 | 1'48.418 | 210.0 |
| 21 | 30 | Pere Tutusaus | Aprilia · Bancaja Aspar Team | +11.094 | 1'48.268 | 210.1 |
| 22 | 21 | Robin Lasser | Aprilia · Grizzly Gas Kiefer Racing | +11.854 | 1'48.790 | 204.7 |
| 23 | 5 | Alexis Masbou | Loncin · Loncin Racing | +13.716 | 1'48.392 | 204.7 |
| 24 | 69 | Louis Rossi | Honda · FFM Honda GP 125 | +13.828 | 1'49.166 | 207.3 |
| 25 | 95 | Robert Muresan | Aprilia · Grizzly Gas Kiefer Racing | +16.155 | 1'49.137 | 207.6 |
| 26 | 82 | Michael Van Der Mark | Honda · Dutch Racing Team | +18.201 | 1'50.254 | 201.8 |
| 27 | 84 | Robert Gull | Derbi · Ajo Motorsports Jnr. Project | +25.692 | 1'50.637 | 204.5 |
| 28 | 81 | Jasper Iwema | Seel · Abbink Bos Racing | +29.208 | 1'51.932 | 202.9 |
| 29 | 89 | Ernst Dubbink | Honda · RV Racing Team | +29.949 | 1'52.212 | 203.3 |
| 30 | 83 | Jerry Van De Bunt | Aprilia · Degraaf Grand Prix | +36.419 | 1'53.569 | 208.5 |
| — | 8 | Lorenzo Zanetti | KTM · ISPA KTM Aran | DNF | 1'47.361 | 209.7 |
| — | 73 | Takaaki Nakagami | Aprilia · I.C. Team | DNF | 1'46.917 | 210.9 |
| — | 7 | Efren Vazquez | Aprilia · Blusens Aprilia Junior | Not restarted | | |
| — | 19 | Roberto Lacalendola | Aprilia · Matteoni Racing | Not restarted | | |
| — | 33 | Sergio Gadea | Aprilia · Bancaja Aspar Team | Not restarted | | |
| — | 45 | Scott Redding | Aprilia · Blusens Aprilia Junior | Not restarted | | |
| — | 80 | Joey Litjens | Seel · Abbink Bos Racing | Not restarted | | |
| — | 93 | Marc Marquez | KTM · Repsol KTM 125cc | Not restarted | | |