| 1+25 | 36 | Mika Kallio | KTM · Red Bull KTM GP125 | 29:46.795 | 1'28.522 | 206.5 |
| 2+20 | 12 | Thomas Lüthi | Honda · Elit Grand Prix | +0.134 | 1'28.627 | 205.1 |
| 3+16 | 58 | Marco Simoncelli | Aprilia · Nocable.it Race | +0.288 | 1'28.787 | 202.6 |
| 4+13 | 14 | Gabor Talmacsi | KTM · Red Bull KTM GP125 | +0.481 | 1'28.575 | 204.7 |
| 5+11 | 60 | Julian Simon | KTM · Red Bull KTM GP125 | +1.435 | 1'28.875 | 203.9 |
| 6+10 | 52 | Lukas Pesek | Derbi · Metis Racing Team | +1.628 | 1'28.802 | 205.6 |
| 7+9 | 32 | Fabrizio Lai | Honda · Kopron Racing World | +15.039 | 1'28.730 | 206.3 |
| 8+8 | 6 | Joan Olive | Aprilia · Nocable.it Race | +15.256 | 1'29.383 | 203.5 |
| 9+7 | 41 | Aleix Espargaro | Honda · Seedorf RC3 - Tiempo Holidays | +15.305 | 1'29.124 | 202.4 |
| 10+6 | 22 | Pablo Nieto | Derbi · Caja Madrid - Derbi Racing | +15.524 | 1'29.143 | 204.9 |
| 11+5 | 54 | Manuel Poggiali | Gilera · Metis Racing Team | +15.577 | 1'29.088 | 204.6 |
| 12+4 | 76 | Michael Ranseder | KTM · Red Bull ADAC KTM Juniors | +20.873 | 1'29.320 | 204.9 |
| 13+3 | 8 | Lorenzo Zanetti | Aprilia · Skilled I.S.P.A. Racing Team | +21.045 | 1'29.150 | 204.8 |
| 14+2 | 11 | Sandro Cortese | Honda · Kiefer-Bos-Castrol Honda | +21.186 | 1'29.499 | 200.4 |
| 15+1 | 35 | Raffaele De Rosa | Aprilia · Matteoni Racing | +25.343 | 1'29.491 | 205.2 |
| 16 | 77 | Stefan Bradl | KTM · Red Bull ADAC KTM Juniors | +26.261 | 1'29.510 | 205.5 |
| 17 | 44 | Karel Abraham | Aprilia · Semprucci Cardion Blauer | +27.185 | 1'29.920 | 203.1 |
| 18 | 25 | Dario Giuseppetti | Aprilia · Semprucci Cardion Blauer | +31.138 | 1'29.825 | 204.8 |
| 19 | 46 | Mateo Tunez | Aprilia · MVA Master Aspar Team | +32.802 | 1'29.598 | 204.1 |
| 20 | 45 | Imre Toth | Aprilia · Road Racing Team Hungary | +33.273 | 1'29.888 | 205.1 |
| 21 | 13 | Patrick Unger | Aprilia · Motorrad Unger Racing | +34.418 | 1'30.086 | 201.4 |
| 22 | 26 | Vincent Braillard | Aprilia · Road Racing Team Hungary | +44.072 | 1'30.228 | 202.6 |
| 23 | 43 | Manuel Hernandez | Aprilia · Totti Top Sport - NGS | +48.367 | 1'30.244 | 198.6 |
| 24 | 98 | Manuel Mickan | Honda · ADAC Sachsen Juniors | +1:06.745 | 1'31.363 | 201.4 |
| 25 | 78 | Hugo Van Den Berg | Aprilia · Varenhof Racing Team | +1:06.857 | 1'31.165 | 198.9 |
| 26 | 28 | Jordi Carchano | Aprilia · MVA Aspar | +2 lap | 1'30.273 | 203.7 |
| — | 7 | Alexis Masbou | Honda · Ajo Motorsport | Excluded | 1'28.822 | 206.5 |
| — | 9 | Toshihisa Kuzuhara | Honda · Angaia Racing | Out on lap 1 | | |
| — | 10 | Federico Sandi | Honda · Angaia Racing | DNF | 1'30.304 | 199.6 |
| — | 15 | Michele Pirro | Malaguti · Malaguti Reparto Corse | Out on lap 1 | | |
| — | 16 | Raymond Schouten | Honda · Arie Molenaar Racing | DNF | 1'31.240 | 201.4 |
| — | 18 | Nicolas Terol | Derbi · Caja Madrid - Derbi Racing | DNF | | 134.2 |
| — | 19 | Alvaro Bautista | Honda · Seedorf RC3 - Tiempo Holidays | Out on lap 1 | | |
| — | 29 | Andrea Iannone | Aprilia · Abruzzo Racing Team | DNF | 1'34.232 | 111.6 |
| — | 31 | Sascha Hommel | Malaguti · Malaguti Reparto Corse | DNF | 1'31.226 | 199.2 |
| — | 33 | Sergio Gadea | Aprilia · Master Aspar | DNF | 1'28.781 | 204.9 |
| — | 47 | Angel Rodriguez | Honda · LG Mobile Galicia Team | DNF | 1'30.667 | 199.8 |
| — | 55 | Hector Faubel | Aprilia · Master Aspar | DNF | 1'34.286 | |
| — | 63 | Mike Di Meglio | Honda · Kopron Racing World | DNF | 1'29.004 | 206.6 |
| — | 71 | Tomoyoshi Koyama | Honda · Ajo Motorsport | DNF | 1'29.034 | 204.1 |
| — | 75 | Mattia Pasini | Aprilia · Totti Top Sport - NGS | DNF | 1'28.638 | 204.9 |