| 1+25 | 14 | Gabor Talmacsi | KTM · Red Bull KTM GP125 | 40:12.658 | 1'59.648 | 228.6 |
| 2+20 | 12 | Thomas Lüthi | Honda · Elit Grand Prix | +0.060 | 1'59.464 | 229.3 |
| 3+16 | 6 | Joan Olive | Aprilia · Nocable.it Race | +14.713 | 1'59.983 | 229.8 |
| 4+13 | 75 | Mattia Pasini | Aprilia · Totti Top Sport - NGS | +14.725 | 2'00.174 | 229.7 |
| 5+11 | 71 | Tomoyoshi Koyama | Honda · Ajo Motorsport | +15.079 | 1'59.911 | 230.6 |
| 6+10 | 54 | Manuel Poggiali | Gilera · Metis Racing Team | +18.040 | 2'00.256 | 233.8 |
| 7+9 | 60 | Julian Simon | KTM · Red Bull KTM GP125 | +18.200 | 2'00.191 | 227.8 |
| 8+8 | 32 | Fabrizio Lai | Honda · Kopron Racing World | +18.683 | 1'59.749 | 229.0 |
| 9+7 | 9 | Toshihisa Kuzuhara | Honda · Angaia Racing | +20.133 | 2'00.387 | 234.6 |
| 10+6 | 7 | Alexis Masbou | Honda · Ajo Motorsport | +20.311 | 2'00.491 | 229.8 |
| 11+5 | 61 | Michele Conti | Honda · Kuja Racing | +28.626 | 2'00.482 | 230.3 |
| 12+4 | 19 | Alvaro Bautista | Honda · Seedorf RC3 - Tiempo Holidays | +31.791 | 2'01.128 | 229.2 |
| 13+3 | 43 | Manuel Hernandez | Aprilia · Totti Top Sport - NGS | +31.817 | 2'00.506 | 230.1 |
| 14+2 | 8 | Lorenzo Zanetti | Aprilia · Skilled I.S.P.A. Racing Team | +34.742 | 2'00.523 | 234.7 |
| 15+1 | 35 | Raffaele De Rosa | Aprilia · Matteoni Racing | +34.762 | 2'00.802 | 228.8 |
| 16 | 29 | Andrea Iannone | Aprilia · Abruzzo Racing Team | +45.303 | 2'00.986 | 227.8 |
| 17 | 41 | Aleix Espargaro | Honda · Seedorf RC3 - Tiempo Holidays | +45.410 | 2'00.856 | 232.7 |
| 18 | 25 | Dario Giuseppetti | Aprilia · Semprucci Cardion Blauer | +48.459 | 2'01.698 | 228.5 |
| 19 | 15 | Michele Pirro | Malaguti · Malaguti Reparto Corse | +48.610 | 2'01.252 | 226.8 |
| 20 | 42 | Gioele Pellino | Malaguti · Malaguti Reparto Corse | +48.615 | 2'00.888 | 226.3 |
| 21 | 18 | Nicolas Terol | Derbi · Caja Madrid - Derbi Racing | +49.412 | 2'01.256 | 232.0 |
| 22 | 22 | Pablo Nieto | Derbi · Caja Madrid - Derbi Racing | +49.460 | 2'01.648 | 230.5 |
| 23 | 28 | Jordi Carchano | Aprilia · MVA Aspar | +53.125 | 2'01.873 | 229.7 |
| 24 | 91 | Lorenzo Baroni | Aprilia · RCGM Team FMI | +1:02.887 | 2'01.854 | 231.6 |
| 25 | 45 | Imre Toth | Aprilia · Road Racing Team Hungary | +1:05.235 | 2'01.805 | 230.7 |
| 26 | 16 | Raymond Schouten | Honda · Arie Molenaar Racing | +1:05.289 | 2'02.167 | 230.2 |
| 27 | 44 | Karel Abraham | Aprilia · Semprucci Cardion Blauer | +1:05.307 | 2'01.989 | 230.2 |
| 28 | 26 | Vincent Braillard | Aprilia · Road Racing Team Hungary | +1:07.881 | 2'01.992 | 232.7 |
| 29 | 92 | Luca Verdini | Aprilia · RCGM Team FMI | +1:38.237 | 2'03.890 | 224.5 |
| — | 10 | Federico Sandi | Honda · Angaia Racing | DNF | 2'01.468 | 230.8 |
| — | 11 | Sandro Cortese | Honda · Kiefer-Bos-Castrol Honda | DNF | 2'01.184 | 228.0 |
| — | 33 | Sergio Gadea | Aprilia · Master Aspar | DNF | 2'00.034 | 232.1 |
| — | 36 | Mika Kallio | KTM · Red Bull KTM GP125 | DNF | 1'59.551 | 229.9 |
| — | 47 | Angel Rodriguez | Honda · LG Mobile Galicia Team | DNF | 2'00.918 | 227.4 |
| — | 52 | Lukas Pesek | Derbi · Metis Racing Team | DNF | 1'59.743 | 229.7 |
| — | 55 | Hector Faubel | Aprilia · Master Aspar | DNF | 1'59.464 | 231.6 |
| — | 58 | Marco Simoncelli | Aprilia · Nocable.it Race | DNF | 1'59.586 | 229.3 |
| — | 63 | Mike Di Meglio | Honda · Kopron Racing World | DNF | 2'00.496 | 231.4 |
| — | 93 | Nico Vivarelli | Honda · Racing Service | DNF | 2'01.359 | 230.2 |