| 1+25 | 14 | Gabor Talmacsi | KTM · Red Bull KTM GP125 | 38:09.487 | 2'13.628 | 212.8 |
| 2+20 | 55 | Hector Faubel | Aprilia · Master Aspar | +0.657 | 2'13.536 | 219.4 |
| 3+16 | 75 | Mattia Pasini | Aprilia · Totti Top Sport - NGS | +0.801 | 2'13.703 | 216.0 |
| 4+13 | 19 | Alvaro Bautista | Honda · Seedorf RC3 - Tiempo Holidays | +0.847 | 2'13.561 | 215.1 |
| 5+11 | 7 | Alexis Masbou | Honda · Ajo Motorsport | +1.403 | 2'13.581 | 216.7 |
| 6+10 | 60 | Julian Simon | KTM · Red Bull KTM GP125 | +3.972 | 2'13.739 | 211.9 |
| 7+9 | 71 | Tomoyoshi Koyama | Honda · Ajo Motorsport | +4.259 | 2'13.747 | 214.4 |
| 8+8 | 54 | Manuel Poggiali | Gilera · Metis Racing Team | +4.323 | 2'13.773 | 216.5 |
| 9+7 | 33 | Sergio Gadea | Aprilia · Master Aspar | +4.492 | 2'13.903 | 217.1 |
| 10+6 | 12 | Thomas Lüthi | Honda · Elit Grand Prix | +13.934 | 2'13.636 | 214.1 |
| 11+5 | 22 | Pablo Nieto | Derbi · Caja Madrid - Derbi Racing | +18.262 | 2'14.190 | 216.5 |
| 12+4 | 76 | Michael Ranseder | KTM · Red Bull ADAC KTM Juniors | +20.693 | 2'14.219 | 216.3 |
| 13+3 | 6 | Joan Olive | Aprilia · Nocable.it Race | +21.091 | 2'14.513 | 214.4 |
| 14+2 | 63 | Mike Di Meglio | Honda · Kopron Racing World | +21.196 | 2'14.335 | 215.1 |
| 15+1 | 52 | Lukas Pesek | Derbi · Metis Racing Team | +21.304 | 2'14.468 | 219.3 |
| 16 | 18 | Nicolas Terol | Derbi · Caja Madrid - Derbi Racing | +21.439 | 2'14.566 | 213.8 |
| 17 | 43 | Manuel Hernandez | Aprilia · Totti Top Sport - NGS | +21.574 | 2'14.482 | 216.6 |
| 18 | 32 | Fabrizio Lai | Honda · Kopron Racing World | +21.575 | 2'14.668 | 214.7 |
| 19 | 8 | Lorenzo Zanetti | Aprilia · Skilled I.S.P.A. Racing Team | +30.737 | 2'14.555 | 212.0 |
| 20 | 58 | Marco Simoncelli | Aprilia · Nocable.it Race | +37.546 | 2'13.582 | 217.8 |
| 21 | 42 | Gioele Pellino | Malaguti · Malaguti Reparto Corse | +37.777 | 2'14.527 | 207.9 |
| 22 | 47 | Angel Rodriguez | Honda · LG Mobile Galicia Team | +37.843 | 2'14.955 | 210.4 |
| 23 | 25 | Dario Giuseppetti | Aprilia · Semprucci Cardion Blauer | +40.976 | 2'15.331 | 213.3 |
| 24 | 11 | Sandro Cortese | Honda · Kiefer-Bos-Castrol Honda | +41.021 | 2'15.449 | 213.7 |
| 25 | 45 | Imre Toth | Aprilia · Road Racing Team Hungary | +50.079 | 2'16.005 | 215.0 |
| 26 | 29 | Andrea Iannone | Aprilia · Abruzzo Racing Team | +51.815 | 2'15.537 | 210.6 |
| 27 | 26 | Vincent Braillard | Aprilia · Road Racing Team Hungary | +51.862 | 2'16.104 | 215.1 |
| 28 | 28 | Jordi Carchano | Aprilia · MVA Aspar | +55.996 | 2'15.969 | 212.9 |
| 29 | 79 | Gert-Jan Kok | Honda · Jan Bakker Auto's Elburg | +1:15.161 | 2'17.376 | 204.0 |
| 30 | 37 | Joey Litjens | Honda · Litjens Racing | +1:43.235 | 2'19.179 | 205.0 |
| 31 | 78 | Hugo Van Den Berg | Aprilia · Varenhof Racing Team | +1:50.080 | 2'18.832 | 200.3 |
| — | 9 | Toshihisa Kuzuhara | Honda · Angaia Racing | DNF | | |
| — | 10 | Federico Sandi | Honda · Angaia Racing | DNF | 2'25.784 | |
| — | 15 | Michele Pirro | Malaguti · Malaguti Reparto Corse | DNF | 2'18.210 | 201.7 |
| — | 16 | Raymond Schouten | Honda · Arie Molenaar Racing | DNF | 2'14.905 | 214.6 |
| — | 35 | Raffaele De Rosa | Aprilia · Matteoni Racing | DNF | 2'14.756 | 212.7 |
| — | 36 | Mika Kallio | KTM · Red Bull KTM GP125 | DNF | 2'13.671 | 215.7 |
| — | 41 | Aleix Espargaro | Honda · Seedorf RC3 - Tiempo Holidays | DNF | 2'23.539 | |
| — | 44 | Karel Abraham | Aprilia · Semprucci Cardion Blauer | Out on lap 1 | | |
| — | 46 | Mateo Tunez | Aprilia · MVA Master Aspar Team | DNF | 2'18.281 | 209.8 |