| 1+25 | 55 | Hector Faubel | Aprilia · Master - MVA Aspar Team | 39:30.095 | 2'04.059 | 228.5 |
| 2+20 | 19 | Alvaro Bautista | Aprilia · Master - MVA Aspar Team | +0.243 | 2'04.192 | 227.0 |
| 3+16 | 33 | Sergio Gadea | Aprilia · Master - MVA Aspar Team | +7.240 | 2'04.297 | 231.2 |
| 4+13 | 24 | Simone Corsi | Gilera · Squadra Corse Metis Gilera | +8.340 | 2'04.333 | 229.4 |
| 5+11 | 6 | Joan Olive | Aprilia · SSM Racing | +9.127 | 2'03.825 | 230.0 |
| 6+10 | 14 | Gabor Talmacsi | Honda · Humangest Racing Team | +10.749 | 2'04.597 | 226.9 |
| 7+9 | 52 | Lukas Pesek | Derbi · Derbi Racing | +18.258 | 2'04.733 | 231.9 |
| 8+8 | 8 | Lorenzo Zanetti | Aprilia · Skilled I.S.P.A. Racing Team | +22.800 | 2'04.823 | 229.2 |
| 9+7 | 71 | Tomoyoshi Koyama | Malaguti · Malaguti Ajo Corse | +23.224 | 2'04.652 | 229.7 |
| 10+6 | 10 | Angel Rodriguez | Aprilia · 3C Racing | +23.240 | 2'04.758 | 233.2 |
| 11+5 | 60 | Julian Simon | KTM · Red Bull KTM GP 125 | +23.521 | 2'04.446 | 229.4 |
| 12+4 | 1 | Thomas Lüthi | Honda · Elit - Caffe Latte | +23.639 | 2'05.084 | 229.5 |
| 13+3 | 32 | Fabrizio Lai | Honda · Valsir Seedorf Racing | +23.656 | 2'04.663 | 230.3 |
| 14+2 | 22 | Pablo Nieto | Aprilia · Multimedia Racing | +23.716 | 2'04.634 | 230.8 |
| 15+1 | 29 | Andrea Iannone | Aprilia · TicinoHosting Campetella JNR Team | +36.240 | 2'05.054 | 226.7 |
| 16 | 11 | Sandro Cortese | Honda · Elit - Caffe Latte | +36.311 | 2'05.507 | 228.4 |
| 17 | 75 | Mattia Pasini | Aprilia · Master - MVA Aspar Team | +42.922 | 2'05.008 | 229.6 |
| 18 | 43 | Manuel Hernandez | Aprilia · Nocable Angaia Racing | +43.248 | 2'05.733 | 225.7 |
| 19 | 17 | Stefan Bradl | KTM · Red Bull KTM Junior Team | +55.975 | 2'06.315 | 232.5 |
| 20 | 7 | Alexis Masbou | Malaguti · Malaguti Ajo Corse | +56.027 | 2'06.450 | 229.6 |
| 21 | 41 | Aleix Espargaro | Honda · Wurth Honda BQR | +56.352 | 2'06.449 | 227.6 |
| 22 | 44 | Karel Abraham | Aprilia · Cardion AB Motoracing | +56.753 | 2'06.563 | 223.0 |
| 23 | 16 | Michele Conti | Honda · Valsir Seedorf Racing | +57.435 | 2'05.998 | 227.8 |
| 24 | 35 | Raffaele De Rosa | Aprilia · Multimedia Racing | +59.703 | 2'05.304 | 231.6 |
| 25 | 21 | Mateo Tunez | Aprilia · Master - MVA Aspar Team | +59.842 | 2'06.703 | 227.5 |
| 26 | 9 | Michael Ranseder | KTM · Red Bull KTM Junior Team | +1:00.567 | 2'05.814 | 227.9 |
| 27 | 18 | Nicolas Terol | Derbi · Derbi Racing | +1:00.793 | 2'06.330 | 230.0 |
| 28 | 23 | Lorenzo Baroni | Honda · Humangest Racing Team | +1:09.219 | 2'06.778 | 225.6 |
| 29 | 45 | Imre Toth | Aprilia · Team Toth | +1:20.747 | 2'07.875 | 226.1 |
| 30 | 53 | Simone Grotzkyj | Aprilia · TicinoHosting Campetella JNR Team | +1:22.635 | 2'07.988 | 225.9 |
| 31 | 20 | Roberto Tamburini | Aprilia · Matteoni Racing | +1:28.342 | 2'07.511 | 221.6 |
| 32 | 26 | Vincent Braillard | Aprilia · Multimedia Racing | +1:29.066 | 2'08.295 | 225.6 |
| 33 | 13 | Dino Lombardi | Aprilia · 3C Racing | +1:33.910 | 2'08.247 | 220.7 |
| 34 | 37 | Joey Litjens | Honda · Arie Molenaar Racing | +1:34.580 | 2'08.276 | 227.8 |
| 35 | 12 | Federico Sandi | Aprilia · SSM Racing | +1:42.683 | 2'06.970 | 220.7 |
| — | 15 | Michele Pirro | Aprilia · WTR Blauer USA | DNF | 2'08.689 | 219.4 |
| — | 36 | Mika Kallio | KTM · Red Bull KTM GP 125 | DNF | 2'04.014 | 229.1 |
| — | 38 | Bradley Smith | Honda · Repsol Honda | DNF | 2'06.850 | 229.8 |
| — | 63 | Mike Di Meglio | Honda · FFM Honda Grand Prix 125 | DNF | 2'04.836 | 230.5 |